Good to see MS is helping you to tackle your malt substitution problem. Maybe put your location in your user profile as this might help get an answer from others as well. A good question from you on SRM and Lovibond...
That's my Error on the Colour
I got this bit wrong sorry dmk. I'll explain why. Firstly, don't know why, I thought you had just changed the colours until they matched what you wanted

. Secondly, I had forgotten the SRM to Lovibond conversion formula, which, is very amusing, as I wrote the Colour Conversion section of The BIABacus - see the top right on the second sheet. Here's why my brain failed me...
Hold your head on, again

.
I haven't studied beer colour for about 4 years and it's a really confusing area. For a start, there's the old EBC and new EBC measurement methods, but many brewers still use the old EBC laboratory method which requires a different formula to convert to SRM - see
here. On top of that, you have the situation where beer colour was measured for years in °Lovibond whereas now (but not always

), beer colour in the US is measured in SRM. Because SRM and Lovibond were almost identical visually (any beer over about 22 SRM appears black), SRM and Lovibond were often used interchangeably but the fat more precise conversion is what the BIABacus uses and what the converter you found uses.
So, a good reminder for me. Let's see if I can summarise...
As a general rule, grain colour in the US is measured in °Lovibond whereas beer colour is measured in SRM. In Europe, I don't think they measure the grain colour (not completely sure on this), only the colour the grain produces when a sample (mixed with water) is measured with a spectrometer. Beer colour is measured when a beer sample is measured with a spectrometer.
The long and short of it is that you did the right thing.
Your other Colour Question.
Firstly, stick with the colours you know for sure. In other words, leave the Crystal as 318.7 EBC and the Roast at 131.9. As for the colour of the British Pale Ale Malt, which is not given in the recipe, this could be anything but I think your 6.5 EBC might be a better average even though it is going to put you further away from the book's 'total colour'.
Put those in and you'll get 24.1 EBC / 12.2 SRM compared to the books 19.7 / 10.
I'm at a loss on this. You can try this in another program, and, assuming you are using the EBC's, weights etc,. we have, you'll get the same result or, even higher due to the VIF versus VAW problem I mentioned in my last post.
I'd have to go through some of the other BCS recipes to see if this is a consistent problem. Perhaps, °L was made to equal 1 SRM (same error I did?).
One last thing (and this isn't the answer to the discrepancy), the colour estimate formulas we use in software are very much approximations and have some obvious flaws. As I said in my last post, don't go religiously trying to match colour. For example, kettle efficiency will affect the colour that your software estimates. Look at the left and right hand sides of Section C and you'll see a difference. We have to use less grain than the original recipe to get the same amount of sugar as our kettle set-up is more efficient. Does this also mean we can also get the same colour with the lower grain bill? I don't know, however, it is not an area that is of concern or interest to me. As long as I'm getting the same amount of sugars and flavours, that is what matters.
IBU's
Looks like your brain is having trouble accepting the many problems we have with IBU estimations. Did you see that pic in the post I linked?
Here is the link again as it sort of gets lost in all the text I wrote.
Look at the Burton Ale recipe. If you use Rager to estimate the IBU's, you get 45.3, whereas if you use Tinseth, you get 34.6. Same recipe, same equipment and same software. Crazy eh?
Given that alone, let alone all the other possible problems that are mentioned in that link, and a few I didn't mention, 29.4 Tinseth versus 32 Rager is perfectly acceptable.
So, don't read more. Instead, just read that link slowly, with a beer, and let it sink in.
Hop Boiling
No advantage apart from what you said. In some recipes, you may only want bitterness and no flavour from the hop, so you would consider moving it to 75.
One Final Really Important Thing
It's very easy to hold numbers up as Gods or, to try and copy a recipe perfectly. Given some of the problems we've already explored, you also have poor terminology or a lack of information. Crystl 120L from Briess might have different characteristics from Crisp's for example. Those individual maltsters also might have one batch of
their pale ale malt being 5.5 EBC and the next 7.5 EBC.
Also, hops can vary, not only in AA percentage, each year but, also flavour.
Even with all these so-called 'worries', the real truth is that even though you're ingredients will
never be identical to the recipe you are trying to duplicate, even if one or two of your substitutions are 20% off say, you will get an excellent beer!
You have your numbers, so just choose one shop, and then get the most appropriate malts. And, if it is a knowledgeable shop, they'll be able to help with your substitutions.
It's time for you to brew

,
PP